WebIn this work, we applied GCMC in 21 protein-ligand systems to assess the performance of GCMC for rehydrating buried water sites. While our results show that GCMC can rapidly rehydrate all selected water sites for most systems, it fails in 5 systems. In most failed systems, we observe protein/ligand motions, which occur in the absence of water ... WebThe adsorption properties of water adsorbed on various silica substrates are investigated by way of Grand Canonical Monte Carlo simulations (GCMC). The SPC and PN-TrAZ potential are used to describe water – water and water –silica interactions. The numerical sample of mesoporous silica glass (pore size: 3.6 nm) was obtained by off-lattice …
Condensation‐Assisted Separation of Alkanes by Silica …
WebMar 22, 2003 · Then, the water molecules were absorbed back to the interlayer spacing created by removing SiO 2 through the GCMC simulation [29]. The reaction between defective silicate chains and water ... WebJun 1, 2008 · The water-water interactions are described with the SPC model, while water-silica interactions are calculated in the framework of the PN-TrAZ model. The water … harry thurston peck
Enhancing Water Sampling in Free Energy Calculations with Grand ...
Webtimescales on which water exchange between protein and solvent can take place. Grand canonical Monte Carlo (GCMC) is a simulation technique which avoids this issue by attempting the direct insertion and deletion of water molecules. GCMC is, however, hampered by low acceptance probabilities for insertions in congested systems. To address WebAdsorption of water in a silica crack using the grand canonical Monte Carlo method Figure: From left to right: amorphous silica, cracked amorphous silica, cracked amorphous … WebJun 15, 2024 · Shale generally contains a certain amount of primary water, and isothermal adsorption experiments on wet samples show that water inhibits methane adsorption. Researches on methane adsorption mainly focus on the conditions of low pressure and water content. In this study, a hybrid GCMC-MD simulation method is proposed to study … charles stanley and herschel walker