2024 Marine atlas of tara ocean unigenes

Marine atlas of tara ocean unigenes

Author: ksij

August undefined, 2024

WebThe Tara Oceans metagenomes (OM_RGC_v2_metaG) and metatranscriptomes (OM_RGC_v2_metaT) were searched using these pHMMs according to a published … Web29 mrt. 2024 · Subsequent searches of large metagenomics databases, including the Marine Atlas of Tara Oceans Unigenes (MATOUv1), comprising eukaryote unigenes, 28 revealed several more AmDH sequences that were evaluated for activity by Caparco and co-workers after sequence design and heterologous expression in E. coli. 29 Of these, …

Ocean Gene Atlas: exploring the biogeography of plankton genes …

Web51 Metagenomes from the Tara Oceans project have been used to assess 52 mycoplankton diversity [6, 7], but the associated metatranscriptomes are yet to be fully 53 explored … WebBiogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of … bob and impossible calculation

Transcriptome reconstruction and functional analysis of eukaryotic ...

Web30 nov. 2024 · The most similar, and most recent, implementation of a querable system exploiting the Tara Ocean data is the Ocean Gene Atlas [43, 44], which allows users to … Web10 feb. 2024 · Coordinates were also mapped for metagenome and metatranscriptome samples containing matches to unigene MATOU-v1_93255274 from the Marine Atlas of Tara Oceans Unigenes 69, a unigene that shares ... Web15 jun. 2024 · This study provides the first structural and mechanistic understanding of the key DMSP synthesis enzyme in marine bacteria (DsyB) and algae (DSYB) that are responsible for the annual production of ~8 billion tonnes of DMSP. DsyB is the first DMSP synthesis enzyme to be analyzed at the structural and mechanistic level. bob and igor

Thomas Rosnet - Marseille, Provence-Alpes-Côte d’Azur, France

Ocean Gene Atlas · bio.tools

WebThe Tara Oceans expeditions generated molecular data coupled with in situ biogeochemical measurements across the main ocean regions, and thus provides a framework to compare diatom genetic and transcriptional flexibility under natural CO 2 variability. WebThe Tara Oceans eukaryote gene catalog. a Sampling map. Geographic distribution of 68 sampling stations at which seawater from the surface (SRF) and/or the deep chlorophyll … bob and jackie campbell scholarship fundWebtive diNPF genes in the Marine Atlas of TARA Oceans Unigenes (MATOU) database [36,37,39] and the MMETSP database [38], using diNPF homologues found in public gen … bob and irene felcher

"WebMATOU (Marine Atlas of Tara Oceans Unigenes) RefGene Database Release 86.0+/04-18, Apr 18 Kyoto University Bioinformatics Center 116,849,350 entries. Search RG003 … " - Marine atlas of tara ocean unigenes

Marine atlas of tara ocean unigenes

The Ocean Gene Atlas: exploring the biogeography of plankton …

WebMarine mycoplankton are likely functionally analogous to their terrestrial counterparts, including performing saprotrophy and degrading high-molecular weight organic … Web7 mei 2024 · Marine microalgae possess distinct and unique metabolic pathways, and can potentially produce specific secondary metabolites with biological activity (e.g., antipredator, allelopathic, antiproliferative, cytotoxic, anticancer, photoprotective, as well as anti-infective and antifouling activities).

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WebAbstract Testing hypothesis about the biogeography of genes using large data resources such as Tara Oceans marine metagenomes and metatranscriptomes requires … WebOcean Gene Atlas (OGA) is a web service to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets (Fig. 1). OGA is …

Web14 jul. 2024 · To assess the potential importance of osmolyte metabolic processes across the global ocean, KOs from genes associated with glycine betaine and mannitol synthesis, breakdown, and transport were searched against the surface data from the Tara Oceans dataset using the Tara Oceans Gene Atlas ( Villar et al., 2024 ). WebThe Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against …

WebOcean Gene Atlas v2.0 is freely ... (2024). Abstract. Testing hypothesis about the biogeography of genes using large data resources such as Tara Oceans marine … Web7 jul. 2024 · Searchable databases on the Web. 4. Link-only databases on the Web. 5. PubMed database. Databases in the third category are integrated for keyword seach, but the actual data are to be obtained from the original sites. Databases in the fourth category are available only in the LinkDB system. PubMed is a link-only database, but the bget page is ...

Web25 jun. 2024 · Totally, 1131 SPX domain-containing genes were detected in the Marine Atlas of Tara Ocean Unigenes (MATOU-v1 catalog), of which 1091 belong to eukaryotes.

WebUpper Right Menu. Login. Help bob and jack a boy and his yakWebCurrently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly prokaryotic gene … climbing shoes black diamondWebCurrently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly prokaryotic gene … bob and hope taftWebThe Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against … bob and jackie campbell scholarshipWeb11 sep. 2024 · We detected a single variant of a complete Gamma-A nifH gene along with other nitrogenase-related genes ( nifKDT) within a metatranscriptomic-based contig of … climbing shoes canberraWebCurrently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly prokaryotic gene sequences associated with both Tara Oceans and Global Ocean Sampling (GOS) gene abundances and (ii) the Marine Atlas of Tara Ocean Unigenes (MATOU) composed of >116 million … bob and i or bob and meWebHere, we use a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions. The individual sequence … boban dinic instagram